Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs12608533 | chr19:29331405 | C/G | 3.4E-6 | 117 | 40.67 | 42.33 | 20.37 | KM Plot |
THYM | rs12610050 | chr19:29331324 | A/T | 3.4E-6 | 117 | 40.67 | 42.33 | 20.37 | KM Plot |
THYM | rs12617247 | chr2:10948586 | A/T | 0.000186 | 119 | 41.22 | 38.83 | 62.72 | KM Plot |
THYM | rs12626547 | chr21:45578308 | T/C | 0.000116 | 118 | 38.58 | 51.23 | 28.43 | KM Plot |
THYM | rs12644565 | chr4:143368049 | C/T | 0.000206 | 118 | 38.33 | 46.6 | 18.42 | KM Plot |
THYM | rs12645339 | chr4:9596615 | C/T | 7.93E-9 | 118 | 41.22 | 42.9 | 12.63 | KM Plot |
THYM | rs12649341 | chr4:6294759 | G/A | 1.43E-6 | 118 | 25.83 | 38.58 | 50.1 | KM Plot |
THYM | rs1265923 | chr4:1209174 | C/T | 8.82E-5 | 116 | 11.73 | 42.35 | 42.25 | KM Plot |
THYM | rs12682305 | chr8:96991762 | A/G | 0 | 119 | 42.73 | 40.67 | 4.13 | KM Plot |
THYM | rs12731339 | chr1:9397229 | G/A | 0.000199 | 114 | 50.07 | 44.38 | 31.07 | KM Plot |
THYM | rs12745630 | chr1:162381833 | C/G | 0.000129 | 119 | 46.6 | 30.55 | 29.72 | KM Plot |
THYM | rs12746024 | chr1:162374853 | A/C | 0.000129 | 119 | 29.72 | 30.55 | 46.6 | KM Plot |
THYM | rs12751930 | chr1:110476726 | C/T | 0.000306 | 119 | 45.87 | 41.77 | 25.8 | KM Plot |
THYM | rs12783917 | chr10:27515564 | C/T | 0 | 117 | 38.83 | 40.67 | 4.13 | KM Plot |
THYM | rs12787015 | chr11:16498063 | T/C | 8.69E-9 | 119 | 40.67 | 52.22 | 7.15 | KM Plot |