Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs12608533 chr19:29331405 C/G 3.4E-6 117 40.67 42.33 20.37 KM Plot
THYM rs12610050 chr19:29331324 A/T 3.4E-6 117 40.67 42.33 20.37 KM Plot
THYM rs12617247 chr2:10948586 A/T 0.000186 119 41.22 38.83 62.72 KM Plot
THYM rs12626547 chr21:45578308 T/C 0.000116 118 38.58 51.23 28.43 KM Plot
THYM rs12644565 chr4:143368049 C/T 0.000206 118 38.33 46.6 18.42 KM Plot
THYM rs12645339 chr4:9596615 C/T 7.93E-9 118 41.22 42.9 12.63 KM Plot
THYM rs12649341 chr4:6294759 G/A 1.43E-6 118 25.83 38.58 50.1 KM Plot
THYM rs1265923 chr4:1209174 C/T 8.82E-5 116 11.73 42.35 42.25 KM Plot
THYM rs12682305 chr8:96991762 A/G 0 119 42.73 40.67 4.13 KM Plot
THYM rs12731339 chr1:9397229 G/A 0.000199 114 50.07 44.38 31.07 KM Plot
THYM rs12745630 chr1:162381833 C/G 0.000129 119 46.6 30.55 29.72 KM Plot
THYM rs12746024 chr1:162374853 A/C 0.000129 119 29.72 30.55 46.6 KM Plot
THYM rs12751930 chr1:110476726 C/T 0.000306 119 45.87 41.77 25.8 KM Plot
THYM rs12783917 chr10:27515564 C/T 0 117 38.83 40.67 4.13 KM Plot
THYM rs12787015 chr11:16498063 T/C 8.69E-9 119 40.67 52.22 7.15 KM Plot